DreEX6083204 @ danRer10
Exon Skipping
Gene
ENSDARG00000103699 | ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:ZFIN;Acc:ZDB-GENE-070410-72]
Coordinates
chr21:9336918-9340850:-
Coord C1 exon
chr21:9340636-9340850
Coord A exon
chr21:9338347-9338445
Coord C2 exon
chr21:9336918-9337255
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTGTTTGTTTTGTTTGTCAGGAG
3' ss Score
8.26
5' ss Seq
ACTGTAAGA
5' ss Score
4.8
Exon sequences
Seq C1 exon
ATAACACGTTTGATGTGGCTTTACTGAAGAACACGTCCGGCCTGGGCTTCAGCTTCAGCCGCGAGGAAATCATTCCCGGAGAGCCTCTGGGCTCCAGTATGGTCCGTGTCAAGAAGCTCTTTCCAGGCCAACCAGCAGCTGAAAGCGGACGCATCAAAGTAGGCGACGTCATTCTGAGGGTCAACCAGACGCCACTCAAGGGCCTGTCCCAACAT
Seq A exon
GAGGTGATTTCGGCTCTGCGGGGAACAGGACAGGAGGTCACCCTTCACTTGTGTAGACCTGAACAGGGCATTTTACCTGAGATGGACACTGCTATTACT
Seq C2 exon
ACACCCGTCCCATCTCCACGAAAGCAGGCCCATCTGCAGCCCCAGGCCTCCCCCAGGACGAGCTCCTCTCCTCAGGAGTCTCAGCGGTTGCTGGGTCCTGTGGAGGAGGCTCTGGAGCGTCTGCTGCTCAAATCTCCCAGCCGCAGGGACAGTTACAGCGATAGCACCGATAATGATGAACTCGAGGAAGCTTTCAGAGCTGCAAACCTGGAGCGAGACAGCAGCGCCTACCAGACACCCGCAGAGAGAGTCTCTTATGAGGACGAGATGGACGACACTGTACAGTCAGCTTATTATTCATCCAGACAGTCCATGGCCAGATCTGAAGACAGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103699-'39-35,'39-34,40-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=0.742 C2=1.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PU(78.8=93.1)
A:
PF0059519=PDZ=PD(18.8=48.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCATTCCCGGAGAGCCTCT
R:
CTGCTTTCGTGGAGATGGGAC
Band lengths:
175-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]