RnoEX6041545 @ rn6
Exon Skipping
Gene
ENSRNOG00000002061 | Ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:RGD Symbol;Acc:1563360]
Coordinates
chr14:7724152-7726223:-
Coord C1 exon
chr14:7726009-7726223
Coord A exon
chr14:7725802-7725900
Coord C2 exon
chr14:7724152-7724483
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTTTCCTCATGTGCCTCCAGGAC
3' ss Score
10.84
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
ATAATACATTTGAGGTCAAACTGTTTAAAAATAGCTCGGGCCTTGGGTTCAGTTTCTCTCGAGAAGATAATCTTACACCAGAGCTAATAAATGGCAGCATAGTAAGGGTTAAAAAGCTTTTCCCTGGACAGCCAGCTGCAGAAAGTGGGAAAATCAATGTTGGAGATGTTATACTGAAAGTTAACGGAGCCCCCTTGAAGGGACTGTCTCAGCAG
Seq A exon
GACGTCATATCTGCTCTCAGGGGAACAGCTCCAGAAGTGTCCTTGCTCCTCTGCAGACCCGCACCTGGTGTGCTGCCAGAAGTCAATACTGCACTTTTG
Seq C2 exon
ACCCCACTGCACTCCCCAGCACACGCATTCCTAAACAGCAGGAAAGAGCATTCCCAGCCGTCACCCTTGTCGGTGGAGCAGTGCGCCAGCTCAGACGAGAACGGGTTGTCCGGCCAAAGCAAAAGACAGTGCAAGCCTCCGTCCCGGAGAGAGAGTTACAGCGACCACAGCGACAGTGGAGAGGAAGAGTCCGTGAGAGCTGCAGCGAAAATGCCGAATGTGATCCCACTGTCAGCCTTTGCACCCGAAGCACTGAGAAGCCAGGGAGAACCCGCAAGCACCATGTTTTACCTCCCTCGGAAAATCCCCGGCAAGCCGGAGTCAGAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002061-'46-47,'46-46,47-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.212 C2=0.901
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PU(77.9=93.1)
A:
PF0059519=PDZ=PD(19.8=51.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTAACGGAGCCCCCTTGAAG
R:
AGGCTTGCACTGTCTTTTGCT
Band lengths:
174-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]