GgaEX1055245 @ galGal4
Exon Skipping
Gene
ENSGALG00000004719 | SPTAN1
Description
spectrin alpha chain, non-erythrocytic 1 [Source:RefSeq peptide;Acc:NP_001036003]
Coordinates
chr17:5147678-5150277:+
Coord C1 exon
chr17:5147678-5147917
Coord A exon
chr17:5148485-5148610
Coord C2 exon
chr17:5150137-5150277
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTTTGATGTTTTGCTTGTAGGGG
3' ss Score
8.34
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
AAAATGGATCCAAGTGGGGTAAAAGTGTTGGAAACAGCAGAAGATATCCAAGAACGGCGTCAGCAGGTTTTGGACCGTTACCACAGGTTCAAGGAGCTGTCTTCTCTGAGGCGCCAAAAACTCGAAGATTCCTATCGGTTCCAGTTCTTCCAGCGCGATGCAGATGAGCTGGAAAAATGGATCCAAGAGAAACTCCAGATAGCATCTGATGAAAATTACAAAGACCCAAGCAATTTACAG
Seq A exon
GGGAAGCTGCAGAAGCACCAGGCCTTTGAAGCTGAGGTGCAGGCCAATTCAGGGGCTATCGTTAAGCTGGATGAGACTGGAAATCAGATGATCAATGAAGGCCATTTTGCATCTGAAACCATAAGA
Seq C2 exon
ACTCGTCTACAGGAGCTGCACCGACTATGGGAGTTACTGCTGGAAAAAATGAGAGAGAAGGGAGTGAAGCTGTTGCAAGCACAGAAGCTGGTGCAATTCTTACGGGAATGTGAAGATGTCATGGACTGGATCAATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004719-'14-9,'14-4,15-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=0.082 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(33.7=44.3)
A:
PF0043516=Spectrin=FE(39.4=100)
C2:
PF0043516=Spectrin=PD(24.0=53.2),PF0043516=Spectrin=PU(18.3=40.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAGGTTCAAGGAGCTGTC
R:
TCTGTGCTTGCAACAGCTTCA
Band lengths:
245-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]