MmuEX6100171 @ mm9
Exon Skipping
Gene
ENSMUSG00000057738 | Spna2
Description
spectrin alpha 2 [Source:MGI Symbol;Acc:MGI:98386]
Coordinates
chr2:29833897-29838820:+
Coord C1 exon
chr2:29833897-29834136
Coord A exon
chr2:29835597-29835722
Coord C2 exon
chr2:29838680-29838820
Length
126 bp
Sequences
Splice sites
3' ss Seq
TACTTGTGTTCCACTACCAGGGA
3' ss Score
7.26
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
AAAATGGATCCAAGTGGGGTCAAAGTGCTGGAAACAGCCGAGGACATCCAGGAGAGACGACAGCAAGTCCTGGATCGGTACCACCGCTTCAAGGAGCTCTCTACCTTACGGCGTCAGAAGCTGGAGGATTCCTATCGGTTCCAGTTTTTTCAAAGAGATGCTGAGGAGTTGGAGAAGTGGATTCAGGAGAAGCTTCAAGTTGCATCTGATGAGAACTACAAAGACCCAACCAACTTGCAG
Seq A exon
GGAAAGCTGCAGAAGCACCAAGCCTTTGAAGCTGAAGTACAGGCTAACTCAGGAGCCATTGTGAAGCTGGACGAGACAGGAAACTTGATGATTTCTGAAGGGCACTTTGCATCTGAAACCATCCGG
Seq C2 exon
ACACGTTTAATGGAGCTGCACCGGCAGTGGGAACTGCTTTTGGAGAAGATGCGGGAGAAAGGAATCAAACTGCTGCAGGCACAGAAGCTGGTGCAGTATTTGCGGGAGTGTGAGGATGTAATGGACTGGATCAATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057738-'2-4,'2-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.186 A=0.044 C2=0.000
Domain overlap (PFAM):
C1:
PF114013=Tetrabrachion=WD(100=45.0),PF0043516=Spectrin=PD(84.0=52.5),PF0043516=Spectrin=PU(43.2=43.8),PF051207=GvpG=PU(51.1=30.0)
A:
PF0043516=Spectrin=FE(50.6=100),PF051207=GvpG=PD(44.7=50.0)
C2:
PF0043516=Spectrin=PD(24.0=53.2),PF0043516=Spectrin=PU(25.7=40.4),PF064417=EHN=PU(31.8=57.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACATCCAGGAGAGACGACA
R:
TCCCGCATCTTCTCCAAAAGC
Band lengths:
255-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: