RnoEX0085704 @ rn6
Exon Skipping
Gene
ENSRNOG00000015396 | Sptan1
Description
spectrin, alpha, non-erythrocytic 1 [Source:RGD Symbol;Acc:621714]
Coordinates
chr3:8547346-8552615:+
Coord C1 exon
chr3:8547346-8547585
Coord A exon
chr3:8548854-8548979
Coord C2 exon
chr3:8552475-8552615
Length
126 bp
Sequences
Splice sites
3' ss Seq
TACTTGTGTGCCACTACCAGGGA
3' ss Score
5.24
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
AAAATGGATCCAAGTGGGGTCAAAGTGCTGGAAACAGCCGAGGACATCCAGGAGAGACGACAGCAGGTTCTGGATCGGTACCACCGCTTCAAGGAGCTCTCTACCTTGCGGCGGCAGAAACTGGAGGATTCCTATCGCTTCCAGTTTTTTCAGAGAGATGCTGAGGAGCTGGAGAAGTGGATTCAGGAGAAGCTTCAAGTTGCCTCTGATGAGAACTACAAAGACCCCACCAACTTGCAG
Seq A exon
GGAAAGCTCCAGAAACACCAAGCCTTTGAAGCTGAAGTACAGGCCAACTCAGGAGCCATTGTGAAGCTGGATGAGACAGGAAACTTGATGATTTCTGAAGGGCACTTTGCATCTGAGACCATCCGG
Seq C2 exon
ACACGTTTAATGGAGCTGCACCGCCAGTGGGAGTTGCTTTTGGAGAAGATGCGGGAGAAAGGAATCAAACTGCTGCAGGCACAGAAGCTGGTGCAGTATTTGCGGGAGTGTGAGGATGTAATGGACTGGATCAATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015396-'10-13,'10-9,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=0.017 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(33.7=44.3)
A:
PF0043516=Spectrin=FE(39.4=100)
C2:
PF0043516=Spectrin=PD(24.0=53.2),PF0043516=Spectrin=PU(18.3=40.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACATCCAGGAGAGACGACA
R:
TCCCGCATCTTCTCCAAAAGC
Band lengths:
255-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]