BtaEX6046488 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015327 | SPTAN1
Description
spectrin, alpha, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11273]
Coordinates
chr11:99131533-99136722:+
Coord C1 exon
chr11:99131533-99131769
Coord A exon
chr11:99132760-99132885
Coord C2 exon
chr11:99136582-99136722
Length
126 bp
Sequences
Splice sites
3' ss Seq
ACTTCACGATCCCCCGGCAGGGC
3' ss Score
7.14
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
ATGGACCCAAGCGGGGTCAAAGTGCTGGAGACAGCAGAGGACATCCAGGAGAGGCGGCAGCAGGTCCTGGACAGATACCACCGCTTCAAGGAGCTCTCGACCCTGAGGCGCCAGAAGCTTGAAGACTCCTACCGATTCCAGTTTTTCCAAAGAGATGCTGAGGAGCTGGAGAAATGGATTCAGGAGAAGCTTCAGATTGCCTCAGATGAGAATTACAAAGACCCAACCAACCTGCAG
Seq A exon
GGCAAGCTGCAGAAGCATCAAGCCTTCGAAGCCGAGGTGCAGGCCAACTCGGGCGCCATCGTGAAGCTGGATGAGACTGGTAACCTGATGATCTCAGAAGGGCACTTTGCATCCGAAACCATCCGG
Seq C2 exon
ACTCGTCTGATGGAGCTGCACCGCCAGTGGGAATTGCTCCTGGAGAAGATGCGGGAGAAAGGCATCAAGCTGCTGCAGGCCCAGAAGCTGGTGCAGTACCTGCGGGAGTGTGAGGATGTGATGGACTGGATCAATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015327-'0-3,'0-0,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.177 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(33.7=44.3)
A:
PF0043516=Spectrin=FE(39.4=100)
C2:
PF0043516=Spectrin=PD(24.0=53.2),PF0043516=Spectrin=PU(18.3=40.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGGTCCTGGACAGATACC
R:
CTTGATGCCTTTCTCCCGCAT
Band lengths:
248-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]