GgaEX1055245 @ galGal3
Exon Skipping
Gene
ENSGALG00000004719 | SPTAN1
Description
NA
Coordinates
chr17:5774510-5777088:+
Coord C1 exon
chr17:5774510-5774728
Coord A exon
chr17:5775296-5775421
Coord C2 exon
chr17:5776948-5777088
Length
126 bp
Sequences
Splice sites
3' ss Seq
CTTTGATGTTTTGCTTGTAGGGG
3' ss Score
8.34
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
AAAGTGTTGGAAACAGCAGAAGATATCCAAGAACGGCGTCAGCAGGTTTTGGACCGTTACCACAGGTTCAAGGAGCTGTCTTCTCTGAGGCGCCAAAAACTCGAAGATTCCTATCGGTTCCAGTTCTTCCAGCGCGATGCAGATGAGCTGGAAAAATGGATCCAAGAGAAACTCCAGATAGCATCTGATGAAAATTACAAAGACCCAAGCAATTTACAG
Seq A exon
GGGAAGCTGCAGAAGCACCAGGCCTTTGAAGCTGAGGTGCAGGCCAATTCAGGGGCTATCGTTAAGCTGGATGAGACTGGAAATCAGATGATCAATGAAGGCCATTTTGCATCTGAAACCATAAGA
Seq C2 exon
ACTCGTCTACAGGAGCTGCACCGACTATGGGAGTTACTGCTGGAAAAAATGAGAGAGAAGGGAGTGAAGCTGTTGCAAGCACAGAAGCTGGTGCAATTCTTACGGGAATGTGAAGATGTCATGGACTGGATCAATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004719-'2-5,'2-2,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=0.083 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(33.7=48.6)
A:
PF0043516=Spectrin=FE(39.4=100)
C2:
PF0043516=Spectrin=PD(24.0=53.2),PF0043516=Spectrin=PU(18.3=40.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAGGTTCAAGGAGCTGTC
R:
TCTGTGCTTGCAACAGCTTCA
Band lengths:
245-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]