DreEX6083505 @ danRer10
Exon Skipping
Gene
ENSDARG00000019231 | spna2
Description
spectrin alpha 2 [Source:ZFIN;Acc:ZDB-GENE-051113-60]
Coordinates
chr21:13068193-13070167:+
Coord C1 exon
chr21:13068193-13068432
Coord A exon
chr21:13069011-13069136
Coord C2 exon
chr21:13070027-13070167
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTACCATCTCTTAGGGA
3' ss Score
9.34
5' ss Seq
CGCGTAAGA
5' ss Score
6.41
Exon sequences
Seq C1 exon
AAAATGGATATCAGTGGAGTCAAGGTTTTAGAGACGGCAGATGACATCCAAGAGCGCCGACAGCAGGTTCTGGACCGGTACCGTCGCTTCAAGGAGCTGTCTGTGGTGCGCAGACAGAAACTCGAAGACTCTTACCGGTTCCAGTTCTTCCGTCGGGATGCAGATGAACTTGAGAAATGGATCCAAGAGAAGCTACAGATTGCCTCTGATGAGAACTACAAGGACCCCAGTAACCTGCAG
Seq A exon
GGAAAGCTCCAGAAACATCAAGCGTTTGAAGCAGAGGTGCAGGCTAACGCCGAGGCCATCATCAAACTGGACGAGACCGGCAACCTCATGATATCCGAGGGCCACTTTGCATCTGAAACCATCCGC
Seq C2 exon
ACCCGTCTAGAGGAGCTTCACCGTCTGTGGGACTTGCTGCTGCAAAAGACTAAAGAGAAGGGAATCCGTCTCCTGCAGGCCCAAAAACTGGTTCAGTACCTCCGTGAGTGTGAGGATGCCCTAGACTGGATCAGTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019231-'5-7,'5-4,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(33.7=44.3)
A:
PF0043516=Spectrin=FE(39.4=100)
C2:
PF0043516=Spectrin=PD(24.0=53.2),PF0043516=Spectrin=PU(18.3=40.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCAGACAGAAACTCGAAGA
R:
TCCTCACACTCACGGAGGTAC
Band lengths:
249-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]