MmuEX6100171 @ mm10
Exon Skipping
Gene
ENSMUSG00000057738 | Sptan1
Description
spectrin alpha, non-erythrocytic 1 [Source:MGI Symbol;Acc:MGI:98386]
Coordinates
chr2:29978377-29983300:+
Coord C1 exon
chr2:29978377-29978616
Coord A exon
chr2:29980077-29980202
Coord C2 exon
chr2:29983160-29983300
Length
126 bp
Sequences
Splice sites
3' ss Seq
TACTTGTGTTCCACTACCAGGGA
3' ss Score
7.26
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
AAAATGGATCCAAGTGGGGTCAAAGTGCTGGAAACAGCCGAGGACATCCAGGAGAGACGACAGCAAGTCCTGGATCGGTACCACCGCTTCAAGGAGCTCTCTACCTTACGGCGTCAGAAGCTGGAGGATTCCTATCGGTTCCAGTTTTTTCAAAGAGATGCTGAGGAGTTGGAGAAGTGGATTCAGGAGAAGCTTCAAGTTGCATCTGATGAGAACTACAAAGACCCAACCAACTTGCAG
Seq A exon
GGAAAGCTGCAGAAGCACCAAGCCTTTGAAGCTGAAGTACAGGCTAACTCAGGAGCCATTGTGAAGCTGGACGAGACAGGAAACTTGATGATTTCTGAAGGGCACTTTGCATCTGAAACCATCCGG
Seq C2 exon
ACACGTTTAATGGAGCTGCACCGGCAGTGGGAACTGCTTTTGGAGAAGATGCGGGAGAAAGGAATCAAACTGCTGCAGGCACAGAAGCTGGTGCAGTATTTGCGGGAGTGTGAGGATGTAATGGACTGGATCAATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057738-'10-8,'10-3,11-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.178 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(33.7=44.3)
A:
PF0043516=Spectrin=FE(39.4=100)
C2:
PF0043516=Spectrin=PD(24.0=53.2),PF0043516=Spectrin=PU(18.3=40.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACATCCAGGAGAGACGACA
R:
TCCCGCATCTTCTCCAAAAGC
Band lengths:
255-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types