GgaEX6010389 @ galGal3
Exon Skipping
Gene
ENSGALG00000005811 | COL7A1
Description
NA
Coordinates
chr12:9329042-9329765:+
Coord C1 exon
chr12:9329042-9329134
Coord A exon
chr12:9329258-9329329
Coord C2 exon
chr12:9329712-9329765
Length
72 bp
Sequences
Splice sites
3' ss Seq
GATGCTCCTCTCCCCTGCAGGGC
3' ss Score
11.42
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGCCGCCATGGACTGCCTGGCCCTCCAGGACCTGTGGGACCACGAGGGCCACCAGGAGAGAGCGTTGAGCAGCCGGGCAAGAAGGGGGACAGG
Seq A exon
GGCTTCCCTGGTGCTGATGGGCGGCCGGGGCTTCCTGGCCCCCCCGGGAACCCTGGGTCTCCTGGCCAGCCG
Seq C2 exon
GGACCACGGGGAACAACGGGGCATCCTGGCCCAAAGGGGGAAAAAGGCGAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811-'29-34,'29-32,30-34=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(43.4=74.2),PF0139113=Collagen=PU(15.5=29.0)
A:
PF0139113=Collagen=FE(39.7=100)
C2:
PF0139113=Collagen=FE(29.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGACTGCCTGGCCCTC
R:
CTCGCCTTTTTCCCCCTTTGG
Band lengths:
137-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]