GgaEX6010389 @ galGal4
Exon Skipping
Gene
ENSGALG00000005811 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr12:9070747-9071345:+
Coord C1 exon
chr12:9070747-9070839
Coord A exon
chr12:9070963-9071034
Coord C2 exon
chr12:9071310-9071345
Length
72 bp
Sequences
Splice sites
3' ss Seq
GATGCTCCTCTCCCCTGCAGGGC
3' ss Score
11.42
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGCCGCCATGGACTGCCTGGCCCTCCAGGACCTGTGGGACCACGAGGGCCACCAGGAGAGAGCGTTGAGCAGCCGGGCAAGAAGGGGGACAGG
Seq A exon
GGCTTCCCTGGTGCTGATGGGCGGCCGGGGCTTCCTGGCCCCCCCGGGAACCCTGGGTCTCCTGGCCAGCCG
Seq C2 exon
GGCAACCAGGGCATTCCTGGCCTCCGAGGGGATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811-'33-33,'33-32,34-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(45.5=100)
A:
PF0139113=Collagen=PD(7.6=20.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGACTGCCTGGCCCTC
R:
GATCCCCTCGGAGGCCAG
Band lengths:
120-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]