RnoEX6037802 @ rn6
Exon Skipping
Gene
ENSRNOG00000020579 | Col7a1
Description
collagen type VII alpha 1 chain [Source:RGD Symbol;Acc:1311417]
Coordinates
chr8:117704778-117705543:+
Coord C1 exon
chr8:117704778-117704840
Coord A exon
chr8:117705343-117705414
Coord C2 exon
chr8:117705508-117705543
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGACCTCTCTGTCTCTTTAGGGC
3' ss Score
12.85
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GGCAGGACCGGTGCTCCAGGCCCACAAGGTGCTCCCGGAAGTACCCAAGCAAAAGGCGAGAGG
Seq A exon
GGCTTTCCTGGCCCAGAAGGCCCTCCAGGCAGTCCTGGCCTACCTGGTGTTCCTGGGTCTCCTGGCGTTAAG
Seq C2 exon
GGCTCCCCAGGGTGGTCTGGCCCTCGTGGGGATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020579-'36-34,'36-33,37-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(33.3=100),PF0139113=Collagen=PU(8.1=23.8)
A:
PF0139113=Collagen=PD(15.0=37.5),PF0139113=Collagen=FE(37.1=100)
C2:
PF0139113=Collagen=FE(17.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACCGGTGCTCCAGG
R:
CACGAGGGCCAGACCACC
Band lengths:
89-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]