MmuEX6069126 @ mm10
Exon Skipping
Gene
ENSMUSG00000025650 | Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108963218-108964085:+
Coord C1 exon
chr9:108963218-108963280
Coord A exon
chr9:108963888-108963959
Coord C2 exon
chr9:108964050-108964085
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGACCTCTCTGCCTTTCTAGGGC
3' ss Score
12.04
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGCAGGACCGGTGCTCCAGGCCCGCAAGGTCCTCCTGGAAGTACCCAGGCAAAAGGCGAGAGG
Seq A exon
GGCTTTCCTGGCCCAGAAGGGCCTCCAGGCAGTCCTGGCCTCCCTGGAGTTCCTGGGTCTCCTGGCATTAAG
Seq C2 exon
GGCTCCACGGGGCGGCCTGGCCCTCGTGGGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025650-'37-47,'37-41,39-47=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(29.4=100),PF0139113=Collagen=PU(8.1=23.8)
A:
PF0139113=Collagen=PD(16.2=45.8),PF0139113=Collagen=FE(37.1=100)
C2:
PF0139113=Collagen=FE(17.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types