MmuEX6069126 @ mm9
Exon Skipping
Gene
ENSMUSG00000025650 | Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108865263-108866130:+
Coord C1 exon
chr9:108865263-108865325
Coord A exon
chr9:108865933-108866004
Coord C2 exon
chr9:108866095-108866130
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGACCTCTCTGCCTTTCTAGGGC
3' ss Score
12.04
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGCAGGACCGGTGCTCCAGGCCCGCAAGGTCCTCCTGGAAGTACCCAGGCAAAAGGCGAGAGG
Seq A exon
GGCTTTCCTGGCCCAGAAGGGCCTCCAGGCAGTCCTGGCCTCCCTGGAGTTCCTGGGTCTCCTGGCATTAAG
Seq C2 exon
GGCTCCACGGGGCGGCCTGGCCCTCGTGGGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025650-'33-33,'33-32,34-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(29.4=100),PF0139113=Collagen=PU(8.1=23.8)
A:
PF0139113=Collagen=PD(16.2=45.8),PF0139113=Collagen=FE(37.1=100)
C2:
PF0139113=Collagen=FE(17.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: