GgaEX6015094 @ galGal4
Exon Skipping
Gene
ENSGALG00000004719 | SPTAN1
Description
spectrin alpha chain, non-erythrocytic 1 [Source:RefSeq peptide;Acc:NP_001036003]
Coordinates
chr17:5158787-5160432:+
Coord C1 exon
chr17:5158787-5158909
Coord A exon
chr17:5159417-5159634
Coord C2 exon
chr17:5160340-5160432
Length
218 bp
Sequences
Splice sites
3' ss Seq
CTCCTTTCTTTGCTTTGTAGGAC
3' ss Score
10.73
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
GCAAGGACTTAATTGGTGTCCAGAATCTGCTAAAGAAGCACCAGGCTTTGCAGGCAGAAATTGCAGGCCATGAGCCTCGCATTAAAGCAGTCACACAAAAAGGAAATGCGATGGTGGAAGAGG
Seq A exon
GACATTTTGCTGCTGAAGATGTGAAGATCAAATTGAATGAACTAAACCAAAAATGGGACTCTCTGAAAGCCAAGGCATCTCAACGGCGACAGGATCTAGAGGATTCTCTGCAAGCTCAGCAGTATTTTGCTGATGCTAATGAGGCAGAATCATGGATGAGGGAAAAGGAGCCCATTGTAGGCAGCACGGATTATGGAAAGGATGAAGACTCTGCTGAG
Seq C2 exon
GCTCTCCTGAAGAAGCATGAAGCTTTGATGTCTGATCTTTCTGCTTACGGCAGTAGCATACAGGCATTAAGGGAACAGGCCCAGTCCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004719-'34-34,'34-33,36-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=0.452 C2=0.161
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(39.0=100)
A:
PF0043516=Spectrin=PD(32.4=46.6),PF0043516=Spectrin=PU(42.9=49.3)
C2:
PF0043516=Spectrin=FE(35.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTAATTGGTGTCCAGAATCTG
R:
CCTGCAGGACTGGGCCTG
Band lengths:
212-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]