MmuEX0044718 @ mm9
Exon Skipping
Gene
ENSMUSG00000057738 | Spna2
Description
spectrin alpha 2 [Source:MGI Symbol;Acc:MGI:98386]
Coordinates
chr2:29851944-29853768:+
Coord C1 exon
chr2:29851944-29852066
Coord A exon
chr2:29852257-29852474
Coord C2 exon
chr2:29853676-29853768
Length
218 bp
Sequences
Splice sites
3' ss Seq
TCTCCACATCATCCTTCCAGGCC
3' ss Score
8.71
5' ss Seq
GAGGTAGCT
5' ss Score
5.82
Exon sequences
Seq C1 exon
GCAAAGATCTTATTGGAGTCCAGAATCTGCTAAAGAAACACCAAGCTTTGCAAGCAGAGATTGCTGGGCATGAACCTCGAATCAAAGCAGTGACACAAAAGGGAAATGCCATGGTGGAGGAAG
Seq A exon
GCCATTTTGCTGCAGAGGATGTGAAGGCCAAACTGAGTGAGCTCAACCAGAAGTGGGAGGCTCTGAAAGCCAAAGCCTCCCAGCGGAGGCAGGATCTAGAGGACTCGCTGCAGGCCCAGCAGTACTTTGCCGATGCCAATGAGGCTGAGTCCTGGATGCGGGAGAAGGAGCCCATTGTGGGCAGTACGGACTATGGGAAGGATGAAGACTCTGCTGAG
Seq C2 exon
GCTCTACTCAAGAAGCATGAAGCTTTGATGTCCGATCTCAGCGCCTATGGCAGCAGCATCCAGGCTCTGCGAGAACAGGCCCAGTCATGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057738-'23-24,'23-23,25-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.381 A=0.411 C2=0.161
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(39.0=100)
A:
PF0043516=Spectrin=PD(32.4=46.6),PF0043516=Spectrin=PU(42.9=49.3)
C2:
PF0043516=Spectrin=FE(35.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGATCTTATTGGAGTCCAGA
R:
GCATGACTGGGCCTGTTCTC
Band lengths:
213-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: