BtaEX6046473 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015327 | SPTAN1
Description
spectrin, alpha, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11273]
Coordinates
chr11:99146149-99147970:+
Coord C1 exon
chr11:99146149-99146271
Coord A exon
chr11:99146937-99147154
Coord C2 exon
chr11:99147878-99147970
Length
218 bp
Sequences
Splice sites
3' ss Seq
TTCCCCTGCCCGCCCTACAGGCC
3' ss Score
10.24
5' ss Seq
GAGGTGATG
5' ss Score
4.44
Exon sequences
Seq C1 exon
GCAAAGATTTAATTGGAGTCCAGAACCTGCTAAAGAAACACCAAGCGCTACAAGCAGAAATTGCTGGCCACGAGCCCCGCATCAAAGCAGTCACACAGAAGGGGAACGCCATGGTGGAGGAGG
Seq A exon
GCCATTTTGCTGCTGAGGACGTGAAGGCCAAGCTCCATGAGCTGAACCAGAAGTGGGAGTCGCTGAAGTCCAAGGCCTCCCAGCGGCGGCAGGACCTGGAGGACTCGCTGCAGGCCCAGCAGTACTTTGCCGACGCCAACGAGGCTGAGTCCTGGATGCGGGAGAAGGAGCCCATCGTGGGCAGCACCGACTATGGCAAAGATGAGGACTCGGCCGAG
Seq C2 exon
GCTCTGCTAAAGAAGCACGAGGCATTGATGTCGGATCTCAGCGCCTATGGCAGCAGCATCCAGGCCCTGCGAGAGCAGGCCCAGTCGTGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015327-'18-25,'18-24,20-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.548 C2=0.226
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(39.0=100)
A:
PF0043516=Spectrin=PD(32.4=46.6),PF0043516=Spectrin=PU(42.9=49.3)
C2:
PF0043516=Spectrin=FE(35.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGATTTAATTGGAGTCCAGA
R:
CACGACTGGGCCTGCTCTC
Band lengths:
212-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]