MmuEX0044718 @ mm10
Exon Skipping
Gene
ENSMUSG00000057738 | Sptan1
Description
spectrin alpha, non-erythrocytic 1 [Source:MGI Symbol;Acc:MGI:98386]
Coordinates
chr2:29996424-29998248:+
Coord C1 exon
chr2:29996424-29996546
Coord A exon
chr2:29996737-29996954
Coord C2 exon
chr2:29998156-29998248
Length
218 bp
Sequences
Splice sites
3' ss Seq
TCTCCACATCATCCTTCCAGGCC
3' ss Score
8.71
5' ss Seq
GAGGTAGCT
5' ss Score
5.82
Exon sequences
Seq C1 exon
GCAAAGATCTTATTGGAGTCCAGAATCTGCTAAAGAAACACCAAGCTTTGCAAGCAGAGATTGCTGGGCATGAACCTCGAATCAAAGCAGTGACACAAAAGGGAAATGCCATGGTGGAGGAAG
Seq A exon
GCCATTTTGCTGCAGAGGATGTGAAGGCCAAACTGAGTGAGCTCAACCAGAAGTGGGAGGCTCTGAAAGCCAAAGCCTCCCAGCGGAGGCAGGATCTAGAGGACTCGCTGCAGGCCCAGCAGTACTTTGCCGATGCCAATGAGGCTGAGTCCTGGATGCGGGAGAAGGAGCCCATTGTGGGCAGTACGGACTATGGGAAGGATGAAGACTCTGCTGAG
Seq C2 exon
GCTCTACTCAAGAAGCATGAAGCTTTGATGTCCGATCTCAGCGCCTATGGCAGCAGCATCCAGGCTCTGCGAGAACAGGCCCAGTCATGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057738-'42-38,'42-37,44-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.381 A=0.404 C2=0.165
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(39.0=100)
A:
PF0043516=Spectrin=PD(32.4=46.6),PF0043516=Spectrin=PU(42.9=49.3)
C2:
PF0043516=Spectrin=FE(35.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGATCTTATTGGAGTCCAGA
R:
GCATGACTGGGCCTGTTCTC
Band lengths:
213-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types