RnoEX6016241 @ rn6
Exon Skipping
Gene
ENSRNOG00000015396 | Sptan1
Description
spectrin, alpha, non-erythrocytic 1 [Source:RGD Symbol;Acc:621714]
Coordinates
chr3:8565835-8567770:+
Coord C1 exon
chr3:8565835-8565957
Coord A exon
chr3:8566150-8566367
Coord C2 exon
chr3:8567678-8567770
Length
218 bp
Sequences
Splice sites
3' ss Seq
ACTCCACATCACCCTTCCAGGCC
3' ss Score
7.74
5' ss Seq
GAGGTAGCT
5' ss Score
5.82
Exon sequences
Seq C1 exon
GCAAAGATCTTATTGGAGTCCAGAATCTGCTAAAGAAGCACCAAGCTTTACAGGCAGAAATTGCTGGCCATGAACCTCGCATCAAAGCAGTGACACAAAAGGGCAATGCCATGGTGGAGGAAG
Seq A exon
GCCATTTTGCTGCTGAGGATGTGAAGGCCAAACTGAGTGAGCTCAACCAGAAGTGGGAGGCACTGAAAGCCAAAGCCTCCCAGCGGAGGCAGGATCTGGAGGACTCACTACAGGCCCAGCAGTACTTTGCCGACGCCAATGAAGCTGAGTCCTGGATGCGGGAGAAGGAGCCCATTGTGGGCAGTACCGACTATGGGAAGGATGAAGACTCTGCTGAG
Seq C2 exon
GCTCTGCTCAAGAAGCATGAAGCTTTGATGTCCGATCTCAGTGCCTACGGCAGCAGCATTCAAGCTTTGCGAGAGCAGGCTCAGTCATGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015396-'38-42,'38-40,39-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.381 A=0.412 C2=0.179
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(39.0=100)
A:
PF0043516=Spectrin=PD(32.4=46.6),PF0043516=Spectrin=PU(42.9=49.3)
C2:
PF0043516=Spectrin=FE(35.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGATCTTATTGGAGTCCAGA
R:
GCATGACTGAGCCTGCTCTC
Band lengths:
213-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]