GgaEX6015681 @ galGal3
Exon Skipping
Gene
ENSGALG00000000847 | GARNL3
Description
NA
Coordinates
chr17:11159718-11161512:+
Coord C1 exon
chr17:11159718-11159833
Coord A exon
chr17:11160653-11160757
Coord C2 exon
chr17:11161438-11161512
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTTTTTCTCTCTTAGAAC
3' ss Score
11.21
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
TAATAAATGGGGAAAAAGCCACCTTGGAAACACCAACATTTTCTCAGAAACGTCAGCGCACTCTAGACATGCTGATCCGCTCTTTATACCAGGACCTGATGCCTGATCTACACAAG
Seq A exon
AACATGCTGAACAGAAGGTCCTTCAGTGATGTGTTACCAGACTCCCCAAAATCAACACGGAAGAAGGAGGAAGCTCGGCAAGCAGAATTTGTCCGACTTGGTCAG
Seq C2 exon
GCACTCAAACTGAAAACTGGTGTGAAAGGGGATGCACCAACTACCTTGGCAACTACAAGCTTTTGTAAAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847-'25-25,'25-24,26-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=0.505 C2=0.040
Domain overlap (PFAM):
C1:
PF0214510=Rap_GAP=PD(14.7=71.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGGGGAAAAAGCCACCTTG
R:
TCCTTTTTACAAAAGCTTGTAGTTGC
Band lengths:
186-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]