DreEX6011848 @ danRer10
Exon Skipping
Gene
ENSDARG00000060631 | garnl3
Description
GTPase activating Rap/RanGAP domain-like 3 (garnl3), mRNA [Source:RefSeq mRNA;Acc:NM_001128527]
Coordinates
chr5:32781762-32784914:-
Coord C1 exon
chr5:32784799-32784914
Coord A exon
chr5:32781927-32782049
Coord C2 exon
chr5:32781762-32781836
Length
123 bp
Sequences
Splice sites
3' ss Seq
TATCTGTACTGCTCCTGTAGGTT
3' ss Score
8.47
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TAATAAATGGAGAAAAAGCCACTCTTGAGACCCCCACTTTTGCTCAGAAACGTCAGCGTACACTGGACATGCTGATCAGATCCCTGTACCAGGATCTCATGCCTGACATGCACAAG
Seq A exon
GTTCCCTTCTCTCCGCAGAACATGCTGAATCGACGCTCATTCAGCGATGTCCTGCCAGAGTCACCTAAATCCGCCCGGAAAAAAGAGGAGGCACGTCAGGCTGAGTTCGTTAGGGTGGGACAG
Seq C2 exon
GCCTTAAAGCTAAAAACTATAGTTCGAGGTGATGCGCCCACCAGTCTAGTCACCACTGGCCTTTGCAGGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060631-'17-19,'17-17,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.367 C2=0.000
Domain overlap (PFAM):
C1:
PF0214510=Rap_GAP=PD(14.9=71.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGAGAAAAAGCCACTCTTGAGA
R:
CTCTTTCCTGCAAAGGCCAGT
Band lengths:
186-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]