GgaEX6015681 @ galGal4
Exon Skipping
Gene
ENSGALG00000000847 | GARNL3
Description
GTPase-activating Rap/Ran-GAP domain-like protein 3 [Source:RefSeq peptide;Acc:NP_001025847]
Coordinates
chr17:10429175-10430969:+
Coord C1 exon
chr17:10429175-10429290
Coord A exon
chr17:10430110-10430214
Coord C2 exon
chr17:10430895-10430969
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTTTTTCTCTCTTAGAAC
3' ss Score
11.21
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
TAATAAATGGGGAAAAAGCCACCTTGGAAACACCAACATTTTCTCAGAAACGTCAGCGCACTCTAGACATGCTGATCCGCTCTTTATACCAGGACCTGATGCCTGATCTACACAAG
Seq A exon
AACATGCTGAACAGAAGGTCCTTCAGTGATGTGTTACCAGACTCCCCAAAATCAACACGGAAGAAGGAGGAAGCTCGGCAAGCAGAATTTGTCCGACTTGGTCAG
Seq C2 exon
GCACTCAAACTGAAAACTGGTGTGAAAGGGGATGCACCAACTACCTTGGCAACTACAAGCTTTTGTAAAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847-'30-38,'30-37,33-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=0.505 C2=0.040
Domain overlap (PFAM):
C1:
PF0214510=Rap_GAP=PD(14.9=71.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGGGGAAAAAGCCACCTTG
R:
TCCTTTTTACAAAAGCTTGTAGTTGC
Band lengths:
186-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]