BtaEX6046201 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006948 | GARNL3
Description
GTPase activating Rap/RanGAP domain-like 3 [Source:HGNC Symbol;Acc:HGNC:25425]
Coordinates
chr11:98107966-98111585:+
Coord C1 exon
chr11:98107966-98108081
Coord A exon
chr11:98110251-98110355
Coord C2 exon
chr11:98111511-98111585
Length
105 bp
Sequences
Splice sites
3' ss Seq
AACTTGTCTTTCTTTTTCAGAAC
3' ss Score
11.43
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TAATTAACGGTGAAAAAGCCACTTTGGAAACCCCAACATTCGCCCAGAAACGTCGACGAACTCTGGATATGTTGATTCGATCTTTATACCAGGATTTGATGCCAGATTTGCACAAG
Seq A exon
AACATGCTTAATAGACGATCTTTCAGTGACGTCTTACCGGAATCGCCCAAGTCAGCGAGGAAGAAAGAAGAGGCCCGCCAGGCAGAGTTCGTTAGAATAGGACAG
Seq C2 exon
GCACTAAAGCTGAAATCCATCGTGAGAGGGGATGCTCCATCAAGCTTGGTGGCATCAGGGATCTGTAAAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006948-'48-17,'48-16,49-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.257 C2=0.000
Domain overlap (PFAM):
C1:
PF0214510=Rap_GAP=PD(14.9=71.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGGTGAAAAAGCCACTTTGG
R:
CTCCTTTTTACAGATCCCTGATGCC
Band lengths:
186-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]