MmuEX6100680 @ mm9
Exon Skipping
Gene
ENSMUSG00000038860 | Garnl3
Description
GTPase activating RANGAP domain-like 3 [Source:MGI Symbol;Acc:MGI:2139309]
Coordinates
chr2:32870706-32874136:-
Coord C1 exon
chr2:32874021-32874136
Coord A exon
chr2:32872205-32872309
Coord C2 exon
chr2:32870706-32870780
Length
105 bp
Sequences
Splice sites
3' ss Seq
AACCTTGTTTCCTTTTTCAGAAT
3' ss Score
11.16
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
TAATTAACGGTGAAAAAGCCACTTTGGAAACCCCAACTTTTGCCCAGAAACGCCGGCGTACTCTGGACATGTTGATCCGCTCCTTATACCAGGATTTGATGCCGGATTTGCATAAG
Seq A exon
AATATGCTCAATCGGCGATCTTTTAGTGATGTTTTACCGGAGTCACCCAAGTCAGCACGGAAAAAAGAGGAGGCCCGGCAGGCCGAGTTTGTGAGAATAGGGCAG
Seq C2 exon
GCCCTGAAGCTCAAGTCCATTGTGAGAGGGGACGCCCCATCAAGCTTGGCAGCATCAGGGATGTGTAAAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038860-'32-29,'32-28,33-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.257 C2=0.080
Domain overlap (PFAM):
C1:
PF0214510=Rap_GAP=PD(14.9=71.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTAACGGTGAAAAAGCCACT
R:
TTTTTACACATCCCTGATGCTGC
Band lengths:
186-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: