GgaEX6023143 @ galGal3
Exon Skipping
Gene
ENSGALG00000005797 | COL20A1
Description
NA
Coordinates
chr20:8823009-8825002:+
Coord C1 exon
chr20:8823009-8823164
Coord A exon
chr20:8824548-8824667
Coord C2 exon
chr20:8824838-8825002
Length
120 bp
Sequences
Splice sites
3' ss Seq
ATAGCTCTTGCCTTCCCCAGGGC
3' ss Score
8.44
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTTCCCAGTTTCAGTGTGACACGTCTGCAATGACCGATATTGTCCTGCTTGTGGATGGATCATGGAGCATTGGGCGCAGCAATTTCAAGCTCATTAAAGAGTTCCTGAGCGCTTTGATTTCCCCATTCAATATTGCCCAAGACAAGATAAGAGTAG
Seq A exon
GGCTGTCCCAGTACAGCAGTGATCCCCGCACAGAGTGGGATCTGAGCGCTTATGCTACGAGGGACCAGGTGCTGGAGGCAGTGAGGAACCTGCGGTACAAGGGTGGCAACACCTTCACAG
Seq C2 exon
GCCTGGCACTGACCCATGTCCTGGAACAAAACCTGAAACCAGATGCTGGTGCCCGGCTGGAAGCTGAGAAATTGGTAATTCTCCTGACTGATGGAAAATCCCAGGACGATGCCAACCTGGCTGCTCAGACCTTGAAAAACATGGGCATAGAGATATTTGCTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005797-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.049 C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=PU(23.1=75.5)
A:
PF0009223=VWA=FE(23.1=100)
C2:
PF0009223=VWA=FE(31.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACGTCTGCAATGACCGAT
R:
GTTGGCATCGTCCTGGGATTT
Band lengths:
255-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]