MmuEX6107624 @ mm10
Exon Skipping
Gene
ENSMUSG00000016356 | Col20a1
Description
collagen, type XX, alpha 1 [Source:MGI Symbol;Acc:MGI:1920618]
Coordinates
chr2:180994200-180995624:+
Coord C1 exon
chr2:180994200-180994358
Coord A exon
chr2:180994877-180994996
Coord C2 exon
chr2:180995460-180995624
Length
120 bp
Sequences
Splice sites
3' ss Seq
CAACCAAAGCCCACCCCTAGGTC
3' ss Score
1.74
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ATCACCCCCAGTTCCAATGTACACCCCCAACACCTGCTGATATAATCTTCCTGGTGGACGGGTCCTGGAGCATCGGCCACAACCACTTCCAGCAGGTGAAAGACTTCCTGGCCAGCATCATCACACAATTTGCAATAGGACCAGATAAAGTCCAAGTAG
Seq A exon
GTCTGACACAGTACAGTGGAGACCCCCAGACCGAGTGGGACCTGAACTCCTTCCAAACCAAGGAGCAAGTGCTAGCAGCTGTACACCACCTCCGCTACAAGGGAGGAAACACATTCACAG
Seq C2 exon
GCCTTGCTCTAACCCATGTGCTGGAGCAGAACCTGAAGCCAGCAGCCGGTGTCCGTCCAGAGGCAGCCAAAGTGTTGATTCTGGTGACAGATGGCAAGTCCCAGGATGATGTGCGCACAGCTGCCAGGATCCTTAAGGATCAGGACATTGATGTCTTTGTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016356-'7-13,'7-10,10-13=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.073 C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=PU(23.1=74.1)
A:
PF0009223=VWA=FE(23.1=100)
C2:
PF0009223=VWA=FE(31.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCCAACACCTGCTGATAT
R:
CACATCATCCTGGGACTTGCC
Band lengths:
250-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types