RnoEX6020720 @ rn6
Exon Skipping
Gene
ENSRNOG00000010326 | Col20a1
Description
collagen type XX alpha 1 chain [Source:RGD Symbol;Acc:1563901]
Coordinates
chr3:176501631-176502869:+
Coord C1 exon
chr3:176501631-176501789
Coord A exon
chr3:176502260-176502379
Coord C2 exon
chr3:176502705-176502869
Length
120 bp
Sequences
Splice sites
3' ss Seq
CAACCAAAGTCCACCCCTAGGTC
3' ss Score
2.96
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ATGACCCCCAGTTCCAGTGCACACCCCCAACACCTGCTGACATAATCTTCCTGGTGGATGGGTCCTGGAGCATCGGCCACAACAACTTTCAGCAGGTGAAAGACTTCCTGGCTAGCATCATCACACACTTTGCAATAGGACCAGATAAAGTCCAAGTAG
Seq A exon
GTCTGACTCAGTACAGTGGAGACCCCCAGACCGAGTGGGACCTGAACTCCTTCCACACCAAGGAGCAAGTGCTAGCAGCAGTACACCACCTCCACTACAAAGGAGGAAACACGTTCACAG
Seq C2 exon
GCCTTGCCCTAACCCATGTGCTGGGGCAGAACCTGAAGCCAGCAGCAGGTGTCCGTCCAGAGGCAGCCAAAGTGTTGATTCTGGTGACAGACGGCAAGTCTCAGGATGATGTGCGCACAGCTGCCAGAGTCCTTAAGGACCAGGACATTGATGTCTTCACTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010326-'9-11,'9-9,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.098 C2=0.018
Domain overlap (PFAM):
C1:
PF0009223=VWA=PU(23.1=74.1)
A:
PF0009223=VWA=FE(23.1=100)
C2:
PF0009223=VWA=FE(31.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTCCTGGTGGATGGGTCC
R:
TCCTTAAGGACTCTGGCAGCT
Band lengths:
254-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]