BtaEX6065453 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004582 | COL20A1
Description
collagen, type XX, alpha 1 [Source:HGNC Symbol;Acc:HGNC:14670]
Coordinates
chr13:54748723-54750104:-
Coord C1 exon
chr13:54749946-54750104
Coord A exon
chr13:54749471-54749590
Coord C2 exon
chr13:54748723-54748887
Length
120 bp
Sequences
Splice sites
3' ss Seq
GGGGACTTCTCCCCTTCCAGGTC
3' ss Score
9.23
5' ss Seq
CAGGTCTGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
GCAGACCCCAGTTCCGCTGCACACCCCCCATGCCTGTGGACATGATCTTCCTGGTGGATGGGTCCTGGAGTATAGGCCACAGTCACTTCCAGCAGGTCAAAGACTTCCTGGCCAGCGTCATCGAGCCCTTTGAAATTGGGCCGGGCAAAGTCCAAGTAG
Seq A exon
GTCTGACTCAGTACAGTGGAGCCCCCCAGACCGAGTGGGACCTGAATGCCTTTGGCACCAAGGAGGAGGTGTTGAATGCTGTGCACAACCTCCACTACAGAGGAGGAAACACATTCACAG
Seq C2 exon
GCCTGGCCCTGACCCACGTGCTGGAGCAGAACCTGAAGCCCAGAGCAGGTCTCCGTCCAGAGGCGGCCAAGCTGGTGATTCTGGTGACAGATGGCAAGTCCCAGGATGATGCCCACACTGCTGGCCACGTGCTCAAGGGTCTGGGTGTCGACATCTTTGCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004582-'13-10,'13-9,14-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.162 A=0.081 C2=0.054
Domain overlap (PFAM):
C1:
PF0009223=VWA=PU(23.1=74.1)
A:
PF0009223=VWA=FE(23.1=100)
C2:
PF0009223=VWA=FE(31.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATGCCTGTGGACATGATC
R:
TCATCCTGGGACTTGCCATCT
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]