DreEX6080068 @ danRer10
Exon Skipping
Gene
ENSDARG00000037517 | slc35c2
Description
solute carrier family 35 (GDP-fucose transporter), member C2 [Source:ZFIN;Acc:ZDB-GENE-030131-2202]
Coordinates
chr23:20547393-20548840:+
Coord C1 exon
chr23:20547393-20547560
Coord A exon
chr23:20547879-20547998
Coord C2 exon
chr23:20548676-20548840
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTAATTTGTTATGGTTTTAGCGC
3' ss Score
7.03
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
CTGTTTCCACACGAAAGCCATTTGAATGCAGTGCTGAGGCTCAGGCGGAACTGGTCCTGCTGGTGGACGGATCCTGGAGCATCGGTCGGACAAACTTCAGAAAAGTGAGGGAGTTCCTTCAGGGCCTTGCTGTCCCCTTTCACATCGGCCCAGAGGGCGTCCAGATAG
Seq A exon
CGCTGTCTCAGTATAGTGGAGATCCACGCACAGAGTGGCATCTTAACAACTTCACATCAAAAGAGCCGCTCCTGGAGGCCGTCAGGAACTTCAGATACAAAGGAGGGAACACTTTTACAG
Seq C2 exon
GGCAGGCTCTCATCCACGCTCTTGAGAACAATCTGAAGGAGGAGGTGGGTGCGCGACCCAACACTCCTCAGTTCTTGCTTCTTCTGACTGATGGCAAATCTCAGGATGACGCCATTGCTGCTGCCAACAGACTGAAGAATGCTGGTGTGGAGATCATTGCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037517-'25-30,'25-29,26-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.175 A=0.171 C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=PU(23.1=70.2)
A:
PF0009223=VWA=FE(23.1=100),PF0385310=YjeF_N=PU(3.5=7.3)
C2:
PF0009223=VWA=FE(31.8=100),PF0385310=YjeF_N=FE(64.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATCGGTCGGACAAACTTC
R:
GCAATGATCTCCACACCAGCA
Band lengths:
251-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]