GgaEX6025258 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C245]
Coordinates
chr23:5359747-5374735:+
Coord C1 exon
chr23:5359747-5361218
Coord A exon
chr23:5374320-5374481
Coord C2 exon
chr23:5374565-5374735
Length
162 bp
Sequences
Splice sites
3' ss Seq
CCCACCCTTCCCTCGCCCAGCTG
3' ss Score
6.97
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AAGTGAACGACTGCTGTGTGCTGATGGAAAACAAGCTGGAAGGGATCGGGCAGTTCACGAGCCGGGTGAGGGAGATGTTCTCGCAGCTGGCGGACCTCGACGATGAACTGGACGGCATGGGGCCCACGGGGAGGGACACCGACAGCCTTCAGTCCCAAGCAGAGGACATTCGCACGTTCCTGGGCAAACTGCAGGCACTTAAGGCCGACATTGAAGCTTCTGAAAGCGAGTGCAAGACGATGCTTGAGGATGAGGGGAGCCCTGATTTGTTAGGGCTGAAACGTGAACTGGAGACGCTGAGTAAGCAGTGCAGCAAGCTGACCGAGAGGGGCAGGAGCCGACAGGAGCAGGTGGAGACCACGCTGGCACGTGTTGAGGACTTCTACGGCAGGTTGAGGGAGCTGACCCACATGACAACGGCGGCGGAGGAGAGTGAGGCTCTGCAGTGGGTGGTGGGCACGGAGGTTGACACCATCAACCAGCAGCTGGCCGACTTCAAG
Seq A exon
CTGTTCCAGAAGGAGCAAGTGGATCCTCTCCAGCTAAAGCTGCAGCAAGTGAATGGAGTTGGCCAAGGACTCATCCAAAGCGCTGGGAAGAACTGTGATGTCCAAGGGCTGGAACATGACATGGAAGAGATCAACACCCGCTGGAACACCCTCAACAAGAAG
Seq C2 exon
GTGGCCCAGAGGATCGCCCAGCTGCAGGAGGCCCTGCTGCGCTGTGGGAAGTTCCAGGATGCCCTGGAGCCGTTGCTGAGCTGGCTGACTGACACCGAGGAGCTCATCTCCAACCAGAAACCTCCCTCTGCTGAGTACAAGGTGGTGAAAGCGCAGATCCAGGAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693-'87-100,'87-98,90-100=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=0.056 C2=0.035
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=WD(100=22.0),PF0043516=Spectrin=WD(100=21.4),PF0043516=Spectrin=PU(40.4=9.0)
A:
PF0043516=Spectrin=FE(48.6=100)
C2:
PF0043516=Spectrin=PD(8.3=15.8),PF0043516=Spectrin=PU(41.1=77.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTTCTACGGCAGGTTGA
R:
AGCAGAGGGAGGTTTCTGGTT
Band lengths:
257-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]