MmuEX6095872 @ mm9

Exon Skipping

Gene

ENSMUSG00000028649 | Macf1

Description

microtubule-actin crosslinking factor 1 [Source:MGI Symbol;Acc:MGI:108559]

Coordinates

chr4:123078636-123110712:-

Coord C1 exon

chr4:123109241-123110712

Coord A exon

chr4:123078994-123079155

Coord C2 exon

chr4:123078636-123078806

Length

162 bp

Sequences

Splice sites

3' ss Seq

CTTTCTCTGCAATTCTCCAGCTG

3' ss Score

7

5' ss Seq

AAGGTGAGC

5' ss Score

9.6

Exon sequences

Seq C1 exon

GAGTGAGCAGTAGCTGCCTGACCATGGAAAACAAGCTAGAGGGGATTGGGCAGTTCCACTGTCGAGTCCGAGAAATGTTTTCTCAATTGGCTGACCTGGATGATGAGCTAGATGGCATGGGAGCCATTGGCAGAGACACGGATAGCCTCCAGTCACAAATTGAGGACGTACGGCTCTTCCTTAACAAAATCCAAGCCCTCAGATTTGACATAGAGGACTCTGAAGCAGAGTGTCGAAAAATGTTGGAGGAAGAGGGGACGTTAGACTTACTGGGTCTCAAGAGGGAGCTAGAAGCCCTTAATAAGCAGTGTGGTAAACTGACAGAGCGAGGGAAAGTTCGCCAGGAGCAGCTAGAGCTGACGTTGGGCCGAGTAGAGGACTTCTATAGGAAACTGAAAGCGCTCAATGATGCCGCCACAGCTGCAGAGGAAGGAGAAGCGCTTCAGTGGATTGTGGGAACTGAAGTGGATGTCATCAACCAGCAACTAGCAGATTTTAAA

Seq A exon

CTGTTTCAGAAAGACCAAGTGGATCCTCTTCAGGTGAAATTGCAGCAGGTGAATGGACTTGGCCAGGGATTAATTCAGAGTGCAGGAAAAAACTGTGATGTGCAGGGTTTAGAACATGATATGGATGAAATTAATACTCGATGGAATACACTGAATAAAAAG

Seq C2 exon

GTTGCACAAAGAATTGCACAACTGCAGGAGGCTCTGTTACATTGTGGGAAATTTCAAGATGCCTTAGAGCCTTTGCTCAGCTGGTTGACAGATACTGAGGAGCTCATAGCCAATCAGAAGCCTCCATCTGCTGAGTATAAAGTGGTGAAAGCACAGATCCAAGAACAGAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000028649-'77-76,'77-75,79-76=AN

Average complexity

A_C1

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.103 A=0.037 C2=0.018

Domain overlap (PFAM):

C1:

PF0043516=Spectrin=PD(7.4=1.6),PF0043516=Spectrin=WD(100=22.0),PF0043516=Spectrin=WD(100=21.4),PF0043516=Spectrin=WD(100=21.4),PF0043516=Spectrin=PU(39.8=8.8)

A:

PF0043516=Spectrin=FE(49.1=100)

C2:

PF0043516=Spectrin=PD(8.3=15.8),PF0043516=Spectrin=PU(41.1=77.2)

Main Inclusion Isoform:

ENSMUSP00000081324f2416A