GgaEX6028713 @ galGal3
Exon Skipping
Gene
ENSGALG00000020084 | CAPN13
Description
NA
Coordinates
chr3:7784115-7786628:+
Coord C1 exon
chr3:7784115-7784189
Coord A exon
chr3:7785028-7785194
Coord C2 exon
chr3:7786473-7786628
Length
167 bp
Sequences
Splice sites
3' ss Seq
TGCAGCTTTCTCCTTTGCAGGAT
3' ss Score
10.53
5' ss Seq
CTGGTAATG
5' ss Score
5.67
Exon sequences
Seq C1 exon
CTCTCCAGAATGGGACTATGTTGAGCCTGAAATTAAGGAAGAGCTCTACAGAAAGAAAAATGATGGAGAATTCTG
Seq A exon
GATGTCCTATGAAAACTTTCGGGAGCAGTTTTCCTGGCTGTGTGTATGTAACTGCACCCCAACGTTTCTGGACTTCGGAGATCAGCGCCACACAGGATGGTCTGTGGAAAGACACATCAACCTGTGGAGCCCGCTGCTCGCTACTGGCAGGAGCAACTGGTCCTCTG
Seq C2 exon
GTGCAGTTTCAAAGAACCCTCAGTATTTCTTCAAAGTGACAAAACATGACCCCAAATCCTACAATGTGGTCATTTCACTCATACAAAAAAATGCAGAGGGTGTGCATGATGCACAGAAATTGAAGATTGGCTTTTTCATCACCACGGTAAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020084-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.5=100)
A:
PF0064816=Peptidase_C2=PD(6.4=33.3),PF0106717=Calpain_III=PU(16.8=42.1)
C2:
PF0106717=Calpain_III=FE(36.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAATGGGACTATGTTGAGCC
R:
CTGTGCTTACCGTGGTGATGA
Band lengths:
227-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]