BtaEX6044980 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008946 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:HGNC:16663]
Coordinates
chr11:69106522-69110856:+
Coord C1 exon
chr11:69106522-69106596
Coord A exon
chr11:69108602-69108747
Coord C2 exon
chr11:69110717-69110856
Length
146 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTCTGTTTATAACAGGAT
3' ss Score
9.92
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
Exon sequences
Seq C1 exon
GTCTCCAGAGTGGCAGGAAACCCACGACCAACGGAAAAGCCAGCTGTATGAGGATAAGGACAATGGCGAGTTTTG
Seq A exon
GATGTCATGTCAAGATTTCCGAGATAACTTCTTCGGCCTGTTTATATGTAACCAAGTTCCAATCAGCCTGGACCATGGAAGCACGCCCCATGAAAGATGGTCCCAAATGATGTTTAAGGACCACTTAATTCCAGGAAACACTGAAG
Seq C2 exon
GATACCAGAGGGGCATGCAATACATCTTCTCTGTGCCAGACAGCATGGAAAACAACAATGTCATCATGTCCTTCAACATTGGGCCACAAAATTTAAAGGCAAAAGACAGGACATTTCCACTGAAGTATGAGGTGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008946-'11-12,'11-10,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.269 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.4=100)
A:
PF0064816=Peptidase_C2=PD(6.4=38.0),PF0106717=Calpain_III=PU(12.5=34.0)
C2:
PF0106717=Calpain_III=FE(33.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCAGAGTGGCAGGAAAC
R:
TGAACACCTCATACTTCAGTGGA
Band lengths:
213-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]