GgaEX6028713 @ galGal4
Exon Skipping
Gene
ENSGALG00000020084 | CAPN13
Description
calpain 13 [Source:HGNC Symbol;Acc:HGNC:16663]
Coordinates
chr3:7765887-7768390:+
Coord C1 exon
chr3:7765887-7765961
Coord A exon
chr3:7766800-7766966
Coord C2 exon
chr3:7768245-7768390
Length
167 bp
Sequences
Splice sites
3' ss Seq
TGCAGCTTTCTCCTTTGCAGGAT
3' ss Score
10.53
5' ss Seq
CTGGTAATG
5' ss Score
5.67
Exon sequences
Seq C1 exon
CTCTCCAGAATGGGACTATGTTGAGCCTGAAATTAAGGAAGAGCTCTACAGAAAGAAAAATGATGGAGAATTCTG
Seq A exon
GATGTCCTATGAAAACTTTCGGGAGCAGTTTTCCTGGCTGTGTGTATGTAACTGCACCCCAACGTTTCTGGACTTCGGAGATCAGCGCCACACAGGATGGTCTGTGGAAAGACACATCAACCTGTGGAGCCCGCTGCTCGCTACTGGCAGGAGCAACTGGTCCTCTG
Seq C2 exon
GTGCAGTTTCAAAGAACCCTCAGTATTTCTTCAAAGTGACAAAACATGACCCCAAATCCTACAATGTGGTCATTTCACTCATACAAAAAAATGCAGAGGGTGTGCATGATGCACAGAAATTGAAGATTGGCTTTTTCATCACCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020084-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.5=100)
A:
PF0064816=Peptidase_C2=PD(6.4=33.3),PF0106717=Calpain_III=PU(18.9=42.1)
C2:
PF0106717=Calpain_III=FE(37.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAATGGGACTATGTTGAGC
R:
CGTGGTGATGAAAAAGCCAATCT
Band lengths:
218-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]