RnoEX0016690 @ rn6
Exon Skipping
Gene
ENSRNOG00000032375 | Capn13
Description
calpain 13 [Source:RGD Symbol;Acc:1562682]
Coordinates
chr6:24607985-24611551:-
Coord C1 exon
chr6:24611477-24611551
Coord A exon
chr6:24609964-24610109
Coord C2 exon
chr6:24607985-24608127
Length
146 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTCTATTTTCCACAGGAT
3' ss Score
11.11
5' ss Seq
CAGGTGGTC
5' ss Score
1.07
Exon sequences
Seq C1 exon
GTCCCAGGAGTGGTGGGAAACCCATGGCTCACGGAAAAGCCAGCTGTACGAGAATAAGGATGACGGCGAGTTTTG
Seq A exon
GATGTCCTGTCGAGATTTCCATGAGAACTTCTCGTGCCTGTACATATGTAGCCAGTTCCCGATCACTATGGATCCTGGAGTCACACCCAATGAGAGCTGGCGACAAATGAGGTTTAAGAACCAAGTGATCTCAGGAAACACAGCAG
Seq C2 exon
GAGGAGATGGAAGGGATATACAGTACCTCTTTGACGTTCAAGAGCCCATGGATGGTAACAATGTCATTGTGGCTTTCACAGTCATGCCACAAAGCCTGAAGACAGAAGAGTGGCCATTTCCACTACAGTTCCAGGTGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032375_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.4=100)
A:
PF0064816=Peptidase_C2=PD(6.1=36.0),PF0106717=Calpain_III=PU(12.4=34.0)
C2:
PF0106717=Calpain_III=FE(34.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAGTGGTGGGAAAC
R:
TGAACACCTGGAACTGTAGTGG
Band lengths:
213-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]