MmuEX6079237 @ mm10
Exon Skipping
Gene
ENSMUSG00000043705 | Capn13
Description
calpain 13 [Source:MGI Symbol;Acc:MGI:2685789]
Coordinates
chr17:73337315-73341149:-
Coord C1 exon
chr17:73341075-73341149
Coord A exon
chr17:73339342-73339487
Coord C2 exon
chr17:73337315-73337457
Length
146 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTCTGTTTTCCACAGGAT
3' ss Score
12.59
5' ss Seq
CAGGTGCTC
5' ss Score
3.6
Exon sequences
Seq C1 exon
GTCCAAGGAGTGGAGAGAAACCCATGACCCACGGAAAAGCCAGCTGTATGAGAACAAGGAAGATGGCGAGTTTTG
Seq A exon
GATGTCCTGTCAAGATTTCCAGGAGAACTTCTCCTGCCTGTTCATATGTAACCAGATCCCGATCACCATGGATCATGGAGTCACACCCAATGAGAGCTGGCGACAAATGAGGTTTACAAACCAAGTGATCTCAAGAAACAGAGCAG
Seq C2 exon
GAGGACATGGGAGGGATATGCAGTATGTCTTTAGTGTTCAAGAGCACACTGCTGGGAATAATGTCGTGGTGGCCTTCACAATCATGCCACAAAGCCTGAATACAGAAGAGGAGAGATTTCCACTACAGTTCCAGGTATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043705-'14-18,'14-15,16-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.551 A=0.040 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.3=100)
A:
PF0064816=Peptidase_C2=PD(6.3=38.0),PF0106717=Calpain_III=PU(13.1=36.0)
C2:
PF0106717=Calpain_III=FE(34.3=100)
Main Skipping Isoform:
ENSMUST00000095208fB6984
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGTGGAGAGAAACCCATGA
R:
TGAATACCTGGAACTGTAGTGGA
Band lengths:
211-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types