DreEX0086916 @ danRer10
Exon Skipping
Gene
ENSDARG00000008553 | zgc:136872
Description
zgc:136872 [Source:ZFIN;Acc:ZDB-GENE-060421-5204]
Coordinates
chr17:3072400-3077684:+
Coord C1 exon
chr17:3072400-3072471
Coord A exon
chr17:3074408-3074568
Coord C2 exon
chr17:3077521-3077684
Length
161 bp
Sequences
Splice sites
3' ss Seq
GTCCTTTTCTGTCTCTGCAGGAT
3' ss Score
12.35
5' ss Seq
TAGGTAATA
5' ss Score
6.84
Exon sequences
Seq C1 exon
ATCTCCACTGTGGGAACTTGTACGTCCCGAGGACCAAAAATACAATGATGTTCTCGACAATGGAGAATTCTG
Seq A exon
GATGTCAATGGAGGATTTCTGCAGGAATTTTTCTGAAATGGATATCTGTTGTTCAGATGTGAATGTCCTTGCCGGATCTCAATCTTCCTCCTGGAAAACTGAAGTGCACAAGGGCCAGTGGGTGATGGGGACAACAGCTGGAGGGTGTTCAAATGACATAG
Seq C2 exon
ACAGTTTTTCGAAGAATCCTCAATATCGTGTGACTCTTAAAGAGACTGTTGAAGATCCTAGAGATAAATCCTCTGCAAATCTCCTGGTGTCTCTCATTCAGAAATCTCACAAGAGGAACAGACACTTGGCCACCAATTTCCACATCGGCTTTAACATTTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008553-'11-13,'11-12,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.072
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.1=100)
A:
PF0064816=Peptidase_C2=PD(6.4=34.5),PF0106717=Calpain_III=PU(15.7=43.6)
C2:
PF0106717=Calpain_III=FE(37.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCACTGTGGGAACTTGTACG
R:
CTCATAAATGTTAAAGCCGATGTGGA
Band lengths:
234-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]