GgaEX6034653 @ galGal3
Exon Skipping
Gene
ENSGALG00000011078 | PTPN13
Description
NA
Coordinates
chr4:47276356-47277755:-
Coord C1 exon
chr4:47277593-47277755
Coord A exon
chr4:47276557-47276771
Coord C2 exon
chr4:47276356-47276454
Length
215 bp
Sequences
Splice sites
3' ss Seq
TGCTACCGCTTCTCTTACAGAGA
3' ss Score
9.12
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GTGGTGCATCTGCTTTTGGAAAAAGGACAGCTTTCGGTGACAAAGGCTCATGCTCCAGTAACACCACAGTGCACGCCTCCGAATCTGGCGGGGCCATGTGAGCCTCAGGAGAAACCAGCAATAAGAGCTACAAACACCAAAGACTACAGCTTTGTCACTGCAG
Seq A exon
AGAACACATTTGAGGTAAAGCTGCTGAAGAACAGCTCAGGTCTCGGGTTCAGCTTCTGCCGTGAGGATAATCCTACTCCGGAGCAGCTGGGCTCAACCATTGTGAGGGTGAAGAAGCTCTTCCCTGGGCAACCTGCTGCAGAGAGTGGGCAGATAGACATTGGGGACGTCATTCTCAAAGTGAATGGGGCATCGCTCAAGGGTTTATCCCAGCAG
Seq C2 exon
GAAGTCATCTCTGCACTGAGGGGAACGTCTCCAGAAGTCTCTCTTCTCCTTTGTCGGCCACCGCCTGGTATACTGCCAGACATCGATCCTGCTTTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011078-'30-36,'30-35,31-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=0.194 C2=0.333
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PD(7.2=10.9)
A:
PF0059519=PDZ=PU(77.9=93.1)
C2:
PF0059519=PDZ=PD(19.8=51.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGCATCTGCTTTTGGAA
R:
ACAAAGCAGGATCGATGTCTGG
Band lengths:
260-475
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]