MmuEX6019175 @ mm10
Exon Skipping
Gene
ENSMUSG00000034573 | Ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:MGI Symbol;Acc:MGI:103293]
Coordinates
chr5:103559871-103562373:+
Coord C1 exon
chr5:103559871-103560033
Coord A exon
chr5:103561932-103562146
Coord C2 exon
chr5:103562275-103562373
Length
215 bp
Sequences
Splice sites
3' ss Seq
TTTTTCATCTTTTTCTCTAGATA
3' ss Score
11.38
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTGGTCCATCTGTTGTTAGAAAAGGGGCAGGTGCCAACATCTAGGGAACGGGATCCTGCAGGCCCACAGAGCCCCCCTCCAGACCAAGACGCCCAAAGACAAGCCCCGGAAAAGGTGGCGAAGCAAACACCCCATGTCAAAGACTACAGCTTTGTTACTGAAG
Seq A exon
ATAATACATTTGAGGTCAAGCTGTTTAAAAATAGCTCAGGCCTTGGATTCAGTTTTTCTCGGGAAGATAATCTTATACCAGAACAAATAAATGGCAGCATAGTAAGGGTTAAAAAGCTCTTCCCTGGACAGCCGGCAGCAGAAAGTGGGAAAATCGATGTTGGAGATGTTATATTGAAAGTTAACGGAGCCCCCTTGAAGGGACTGTCTCAGCAG
Seq C2 exon
GACGTCATCTCTGCTCTCAGGGGAACAGCTCCAGAAGTGTCCTTGCTTCTCTGCAGACCGGCACCTGGTGTGCTACCAGAAATCGATACTACATTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034573-'40-56,'40-45,49-56=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.818 A=0.083 C2=0.091
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PD(7.2=10.9)
A:
PF0059519=PDZ=PU(77.9=93.1)
C2:
PF0059519=PDZ=PD(19.8=51.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTCCATCTGTTGTTAGAAAAGG
R:
AAAATGTAGTATCGATTTCTGGTAGC
Band lengths:
260-475
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types