DreEX6083203 @ danRer10
Exon Skipping
Gene
ENSDARG00000103699 | ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:ZFIN;Acc:ZDB-GENE-070410-72]
Coordinates
chr21:9338347-9341882:-
Coord C1 exon
chr21:9341738-9341882
Coord A exon
chr21:9340636-9340850
Coord C2 exon
chr21:9338347-9338445
Length
215 bp
Sequences
Splice sites
3' ss Seq
CTGTTGTTTACCTGGTCTAGATA
3' ss Score
5.86
5' ss Seq
CATGTACGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
GTGGTGCATCTGTTGATGGAGAGAGGTCAGCCACCAAAAGACAGCATTCATGCTCCTCTCACTCCTCAAGGCACTTCAGAACCTCAGAACAAAACAGTGGAGGAGCCGTCAGCACCAGAAAAAGAGTACAACTTCATTACTGCAG
Seq A exon
ATAACACGTTTGATGTGGCTTTACTGAAGAACACGTCCGGCCTGGGCTTCAGCTTCAGCCGCGAGGAAATCATTCCCGGAGAGCCTCTGGGCTCCAGTATGGTCCGTGTCAAGAAGCTCTTTCCAGGCCAACCAGCAGCTGAAAGCGGACGCATCAAAGTAGGCGACGTCATTCTGAGGGTCAACCAGACGCCACTCAAGGGCCTGTCCCAACAT
Seq C2 exon
GAGGTGATTTCGGCTCTGCGGGGAACAGGACAGGAGGTCACCCTTCACTTGTGTAGACCTGAACAGGGCATTTTACCTGAGATGGACACTGCTATTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103699-'38-34,'38-33,39-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.898 A=0.306 C2=0.742
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PD(7.2=12.2)
A:
PF0059519=PDZ=PU(78.8=93.1)
C2:
PF0059519=PDZ=PD(18.8=48.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTTGATGGAGAGAGGTCAGC
R:
AGTAATAGCAGTGTCCATCTCAGGT
Band lengths:
236-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]