RnoEX6041544 @ rn6
Exon Skipping
Gene
ENSRNOG00000002061 | Ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:RGD Symbol;Acc:1563360]
Coordinates
chr14:7725802-7728361:-
Coord C1 exon
chr14:7728199-7728361
Coord A exon
chr14:7726009-7726223
Coord C2 exon
chr14:7725802-7725900
Length
215 bp
Sequences
Splice sites
3' ss Seq
TTCATTTTTTTTTTCTCTAGATA
3' ss Score
10.59
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGGTCCATCTGTTGTTAGAAAAGGGGCAGTCGCCAACATCTAGAGAACGTGATCCTGCAAGCCCACGGTGTCCCACTCCAGACCAGGATGCCCAAAGTCAAGCCCCAGAAAAGATGGAGAAGCAAACAGCCCATGTCAAAGACTACAGCTTTGTTACTGAAG
Seq A exon
ATAATACATTTGAGGTCAAACTGTTTAAAAATAGCTCGGGCCTTGGGTTCAGTTTCTCTCGAGAAGATAATCTTACACCAGAGCTAATAAATGGCAGCATAGTAAGGGTTAAAAAGCTTTTCCCTGGACAGCCAGCTGCAGAAAGTGGGAAAATCAATGTTGGAGATGTTATACTGAAAGTTAACGGAGCCCCCTTGAAGGGACTGTCTCAGCAG
Seq C2 exon
GACGTCATATCTGCTCTCAGGGGAACAGCTCCAGAAGTGTCCTTGCTCCTCTGCAGACCCGCACCTGGTGTGCTGCCAGAAGTCAATACTGCACTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002061-'45-46,'45-45,46-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.836 A=0.069 C2=0.212
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PD(7.2=10.9)
A:
PF0059519=PDZ=PU(77.9=93.1)
C2:
PF0059519=PDZ=PD(19.8=51.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTCCATCTGTTGTTAGAAAAGG
R:
AAAGTGCAGTATTGACTTCTGGCA
Band lengths:
260-475
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]