Special

GgaEX7006011 @ galGal4

Exon Skipping

Description
NA
Coordinates
chr7:19012490-19014710:+
Coord C1 exon
chr7:19012490-19012696
Coord A exon
chr7:19013447-19013728
Coord C2 exon
chr7:19014330-19014710
Length
282 bp
Sequences
Splice sites
3' ss Seq
TAAAATATTTACTTTGACAGGCA
3' ss Score
6.12
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
Exon sequences
Seq C1 exon
ACATTACGAGCTGTTGGCAAAACATACATGATATTTTTTGTTCTGGTCATTTTTCTGGGTTCCTTCTATTTGATTAATTTGATTTTGGCTGTGGTTGCCATGGCCTATGAAGAACAAAATCAAGCAACTATGGTTGAAGCAGAACAGAGGGAAGCAGACTTGCAGCAGATGCTTGAACAGCTGAAGAAGCAGCAAGAAGAAGCTCAG
Seq A exon
GCAATAGCAGCAGCTGCAGTGGAGATGACAGAGTTTGGTGGTGAAAGTGGACCTTCAGACAGTTCTTCTGAAGCATCCAAGTTTAGCTCAAAAAGCGCCAAAGAAAGGAGAAATAGAAGGAAGAAAAGAAGGCAGAGGGAGCATTCTGGGGAAGAGGATAACATGAAAGATACAAAGCTTTCAAAATCTGAATCAGATGGCAGTATCAGAAGGAAAGGTTTCAGATTTTCTTTCGATGGCAACAAACTTGCTTATGGGACCCGGCTCACATCACCCCACCAG
Seq C2 exon
TCTTTACTAAGCATTCGTGGCTCCCTGTTTTCTCCCAGACGTAGTAGCAGAACAAGTCTTTTCAGTTTTAGAGATCATGGAAAAGAGATAGGATCTGAAAATGACTTTGCTGATGATGAACACAGCACATTTGATGATAATGGAAGCAGAAGAGGTTCTCTTTTTGTACCACTGCGACACAGTGAACGGCGTGGTAGTAACATTAGTCAGGCTAGCAGACCGTCAAGAAGGCTGACACTGTTTCCAGTGAATGGGAAGATGCATAGCACTGTGGATTGCAATGGAGTGGTTTCTTTAGTGGATAGACCTCCATGTCTCTTGTCACCTACAGGGCAGCTGCTGCCAGAGTTGATAATAGACAAACCAACAACTGATGATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027793-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.174 A=0.681 C2=0.583
Domain overlap (PFAM):

C1:
PF0052026=Ion_trans=PD(19.3=44.9),PF0253517=Zip=FE(40.5=100),PF0293211=Neur_chan_memb=PU(42.9=91.3),PF100694=DICT=PU(55.1=71.0),PF0310514=SPX=PU(18.0=58.0)
A:
PF0253517=Zip=PD(45.2=80.9),PF0293211=Neur_chan_memb=PD(55.8=87.2),PF100694=DICT=PD(42.7=40.4),PF0310514=SPX=FE(41.9=100),PF119333=DUF3451=PU(30.1=75.5)
C2:
PF0310514=SPX=PD(38.7=67.7),PF119333=DUF3451=FE(53.4=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAACAGAGGGAAGCAGAC
R:
GACGGTCTGCTAGCCTGACTA
Band lengths:
293-575
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]