GgaEX7008537 @ galGal4
Exon Skipping
Gene
ENSGALG00000006057 | CLK4
Description
CDC-like kinase 4 [Source:HGNC Symbol;Acc:HGNC:13659]
Coordinates
chr13:13446391-13448519:+
Coord C1 exon
chr13:13446391-13446450
Coord A exon
chr13:13447095-13447252
Coord C2 exon
chr13:13448294-13448519
Length
158 bp
Sequences
Splice sites
3' ss Seq
GTTTTTGTTGTGTTTTTCAGGAG
3' ss Score
11.24
5' ss Seq
AAGGTATAA
5' ss Score
7.08
Exon sequences
Seq C1 exon
TTGTGCATGTACCTGTTTGAACACCGAATTCCTGCATATAACGTCCAGCAACGGAAGTTG
Seq A exon
GAGCAGATGCGTCACTCAAAACAAAGCCACTGCCCTGAGTGGGATGACAGGAGGAGCTGGGATCAGAGAAAGCACAGCAGCAGCCGGAAACGCAGGAAACGGTCCCACAGCAGTGGACAGGAAAGCAAGCACTATAAACCAAATCATGTTTCTGAAAG
Seq C2 exon
TCATTATTTGGACGATAGAACCATAAATGAAAGAGACCATCATGACCGGAGATATGTTGAGGAGTACAGAAATGACTTCTGTGAAGTATATGACCACAGGCATTATCACAGAGACTATGAAAAGAGTCACCATCATCACTATAGCAAATCCTCTGGTCGGAGCAGGAAAAGTAGTCATAAAAGGAAGCATAAGAGGCATCATTGCTCCAGTCACCAATCACATTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006057-'1-4,'1-0,6-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.906 C2=0.737
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATATAACGTCCAGCAACGGA
R:
TGTGATTGGTGACTGGAGCAA
Band lengths:
249-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]