GgaINT0048630 @ galGal3
Intron Retention
Gene
ENSGALG00000012526 | PRPF40A
Description
NA
Coordinates
chr7:37188808-37190152:-
Coord C1 exon
chr7:37190032-37190152
Coord A exon
chr7:37188833-37190031
Coord C2 exon
chr7:37188808-37188832
Length
1199 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TTTTTTCCCTTCTCTTCTAGCAT
3' ss Score
11.26
Exon sequences
Seq C1 exon
CAATTGCTGTCTAAGTGCCCCTGGAAAGAGTACAAATCTGATTCTGGAAAGCCATACTACTATAATTCCCAAACAAAGGAATCACGCTGGGCAAAACCCAAAGAACTCGAAGACCTGGAAG
Seq A exon
GTAACATCTGTGACAAGGATGGGCAGAGGGGATGGCAGGGGATTGCAAGCTGTGTTGTAGCAAAAATTTGTTATCAAAGCATAGGAGTTACACATCTGTTAGGCATTAGCCATGCACAGTAGAATGTAGCCTGAGGTGTCTATGGAGCACTCGTTTCTGTGATTTCTACCTCACCAGCCCTTTTTCCTTAATACCCTGCATTTTTCCCTGCTCATGGCAGCAGCAGCAGCTCCCCCTCGTGTCCCTAAACGGGAACTGAATTAGTATGTAACCTGCTGTGGCTTTTTCCAGGCTGTGTGAATCCTCTGTCGTTACATCAGGCAGTGCTTCAACTCTTTCTTCGTTTCAGACCCACTGCAGACCCATTGTCCCTTACTTAGCAATCAGTCCTTTGGAAACCTGTAGAAACTTTTAGTAGGACTTATGTTCAGGCTGGTGAGGGAAGGCAAGAATTAAAGGGCCACTGTACCAATCCACATTCACTTGGGAAAACAGGATAAAAGGTGCTGGATTTCTGTAATACTGTGTAGCTCGTAACTGAGTAAGAATTACTGACACTCTGTTTTGGTTTCTTGGAAGAATTTGAGAAACAGTGATATGCTTTATAATGAAAACAGAGTTTGTCTACTGAAAGCCAGAATTGTGTGTAAGGCTTTGCTTAGCTGTTATTTCCTTTTGTTTTTTGAAATTGTTTTGAGCAGCTGTGAAGGCAGTTGGTACACTTGTACTGCTCTTCCCCGTTGTAAAGAAAATGCCCCTTTTTTCTGGCTTTCCATTCCTCTCATTCTTCACTTTCAGCACCATTTGTTTGGTGTTGTGAGGGAAATAAGATCTTGACCAAAAAAAAGCTACAAAATGAGCTGAGTATGCAATGAGTGCATAAAGGTCTGCATAGGATAAGCATCCGTGACTGTTAGAATATAAAAACATAATCTATTCCAGTAAGCATGAATTTGTCTGTTCTTTAAACTAGTCTGTTCAAGTTGAAATAATTAATTTCAATGGAGAAATGTACCCTTAATCTTTACTTAATGGGATTCCTACAGTTTGTTTTAGATGCTATTTTTTCTGGTTTTTAAAGGGCAGTAGGAACAAAAATATTTAAAGCTAAATTGTGCACACAGCGACTTACAATGCATAAAACATCTTTTTCTGAAGCTGTATTTTAATTGTTGTTTGTTTTTTCCCTTCTCTTCTAG
Seq C2 exon
CATTGATCAAAGCTGAAGAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012526:ENSGALT00000037747:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.759 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0039721=WW=WD(100=73.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]