GgaINT0049054 @ galGal4
Intron Retention
Description
NA
Coordinates
chr7:19008759-19010327:+
Coord C1 exon
chr7:19008759-19009064
Coord A exon
chr7:19009065-19010263
Coord C2 exon
chr7:19010264-19010327
Length
1199 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
TAGCATTACTTTTCCTTTAGGTC
3' ss Score
8.26
Exon sequences
Seq C1 exon
GTAATCCACATTGCATTTTAGATTAGGTAAATATTTAATATTATAATAAAAATCTACCTCTGTTTGCAGGCTTGAAGACTATTGTGGGAGCCTTAATTCAGTCTGTGAAGAAACTCTCAGATGTAATGATTTTGACTGTTTTTTGTCTGAGTGTGTTTGCACTGATTGGACTGCAGCTGTTCATGGGCAACTTGAAGAATAAATGCTTGTTATGGCCATCAAGAAATTCAACCTCTTTTGAAAAGTACTTAGCTCCATACTTTAATGATACAGTGTTTGACTGGGCAGCGTACATTGAGAATGAAA
Seq A exon
GTAAGAATTATTCTTGTAATATGCTGAAGTATTTGTGTATAAATGCACACACCCAAACACCTCAGATTACCATGTTGGGCTATAAGTAAAAATTGATAAAACAGAATGACAAAGAGTATGTATTTTATATATTCATACTGACATGATTGTTTATTCAGTTGATTGCGCTATGAAATGTTTATAGGGTTAGGTTGGAATTGCAGAATCATACATGTTAGAAGAGGCCTTCAAAGTTAAGCTGCTGCTCAGCTGCGAGATCCAGTTAGAGCAGGCTGCTCAGTGCTATTTTCTGTCAAGTTTTGATTATCTCCAAGGATGGAGATACCGTAAACCCTCTGAGGAGCCTGCTGTCTGACTCTAGTCAGTTGTGTTTTGTTCGTTTGTTTGTTTTTTAATATCAACTCAAAATGTCCTGTGATCAAACTTGGGCTAGTTGGCTCATATCCTTTTACATTACACTTCATTAGTCTTCTATGTGATATTTGTAACATGAAGATTTCCCAAGCCTGAACAAAACAAATTCTCTTAGTCTCTCATATGCTTTTTAAGGTTACCTTTAGGTTATAACTGAGACGGAAGAATGCTAGGGAAATATGTGAGCTTTCCTAGTTAAGATAGACTTCATTATAGGGTAGAAGTAAGAATACCTTTGCTATCTGCCATATGAAATAACTTTCTTGGCAAACAAATTCTGAAAATTCACTGTGTTGAGGATAGCATTCATCTGTAGGACTTACTGTAACTAAGGGGACTGACAAGAATATATTCACCCACATAATTTTCAACGCAGGTAGGAATTTTTCCTTGTGGAAATTTATAACTTGTTTGCAGATCGCTCCTAGTGTACAAGGGCAAACCATAGGTAGGTACACAAAATTAAAAGAACATGTGGAAAAACACAATGGATCTCAGAAATAGTGACACTAGAAAACCTATAAAAGCAGTGTATAAATATAGTGACTATATAACTTAATTCATGAAAGAAAATTGCATTCCTGATGGTAATTATGTGGATCCATTTTGATGCTTTCACTGCAGTTGGTTCTGTGAGTTTGTTTTGTTTTGGATTTTTTTTGGTGATGTTTTTTGTGTTGGCCTCAAAAATCAAGAATGCGTCTTTTGACCATTATGTTATTGTTATATTCAGTTTAGTACTTCCTTAGCTCAATTATAATAATTTAGCATTACTTTTCCTTTAG
Seq C2 exon
GTCATTTTTATCGTCTAGAAGGACAAAAGGATTATCTGCTTTGTGGCAATAGCTCAGATGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027793:ENSGALT00000017809:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(37.3=98.4)
A:
NA
C2:
PF0052026=Ion_trans=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCACATTGCATTTTAGATTAGGT
R:
GAGCTATTGCCACAAAGCAGA
Band lengths:
358-1557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]