GgaINT0125895 @ galGal4
Intron Retention
Gene
ENSGALG00000000847 | GARNL3
Description
GTPase-activating Rap/Ran-GAP domain-like protein 3 [Source:RefSeq peptide;Acc:NP_001025847]
Coordinates
chr17:10414670-10416269:+
Coord C1 exon
chr17:10414670-10414739
Coord A exon
chr17:10414740-10416194
Coord C2 exon
chr17:10416195-10416269
Length
1455 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
TATCTTAAACTCTCTCATAGCTT
3' ss Score
6.21
Exon sequences
Seq C1 exon
CTCAGTCTCTGAAGATCTTGGTTGCAGACGTGGAGAGTTTAGCAGGAAGCACTATGGATCTGTGGAGCTT
Seq A exon
GTAAGTTTATTTGCCCATCTTTTAATTTAAACAACTTTTAATGCAGAACTCAAATCCTTTTCATTTCCAGGTAAAAAAATTGCATCTAGTTTGGAAAATGTTTATTCTAAGCTGGACTGGAAAATTATAGGTAAAGAGTTAATGCTCCAGTTCCATGGACTGCTGATATTTTCCCGGTACCTGGTTCTGAGAACTACTACATACCCCAACAGGGGACTTTGAGTTTCTGTTTTTCCCTTCAGAGGGAAAGATAAAAACTGTTTGCATATCACGAGACACTTCTCTTTTTCCATTTCTGCTTGTCCCAGCAGCGTGTGCTTGTTTTACCTTCAACATTAGAGTAAGGCCTTCAGTTTGTTGGCCACACCCTCTCTCATTTTATTTGATTTATTGGCTTCAATTCTAATTATATCGCATTATAGTTTTATCTTGCATTCCGATATCTTTTCTAGTAAATTAGCTTCCCTTCTCAGATAGTTACTGCTGTTATGTTGTTAGGCCCATCACCCTGCCCTTCCCCTTTTTTCCCTTTCCTGCAGTGTGGGTGCATCAGATCCCCCGCCCCATTACTCATGGAACCAGGCTGAACCAGCCTGTGAACCAATCCTGTGAACTGTGAAGCATGGATAGTGCTTCATCTCTGCTGCCCCTTTATCATCACTTTCTTCCCCTGCTCCGATGTGGGTTCCTTCCCATCATGGGATGCAGTCCCTCTCAATATGATCCTGTGTAGGCTTCCCACAGAAAGGAGTTCTTCAAGAACTGCTCCAGCATGGGTCCATACTGCAGGGTGAAGTCAGGAATAGACTGCTCCATCCCAGGTTCCCCATGGGCAGCAGCTCCCACTGGCACTCCTTCTCCACAGTGAGCTCCTCTCCATGGACTGCAATGTGTATATCTGCTCAGATATGTTATACTGTGAGATGCAAGAGGACAGCCTGCTCCACTATGATCCTGTATGTGGGCAGCAGAGGATCTTCTGCACTGGTGGTTTTTCTACCTCCTTCATGCACCTGGGTGTCTGTAGGATTCTTTTTCTCTCTTTTCTTCATTCCCTACTGTCAAAAGAAAGAATTTTAAACATGGCAAAGCTGAGAGGAATAGAATCAGCATGTCTGTAAAACCCGCTGTTTTGAAAGGAACAAGCTTCTAGATCGGTTTCTGAGAGGCGGACATGTTCCTGTGTAGGGATTCTGCATGCTAGTGCAGCTAAAATTTGAGATGGGAATTTCTGATCAGTACCGAATCTGCGAGATGAATGTATAACTCTCCCATTCATGTATCCTTAGAGTTGTATTTGGATCATTCCAAATCTAGTCAAATGGGTAGCAGCTGTGCTGGTTCCCCTGTGAGTTGTGATAAGACACCTGGAAGAAGGAGAAACCAAGTAAGATTTGGTTGCTGATGATATGGATGTTTTTGGAAGTAGAACCTCTATCTTAAACTCTCTCATAG
Seq C2 exon
CTTATATCTAGTGATGCTGATGGAGCTATTCAAAGAGCTGGACGATTCCGAGTGGAAAATGGCTCTTCTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847:ENSGALT00000001243:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.222
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]