GgaINT1004318 @ galGal4
Intron Retention
Description
NA
Coordinates
chr7:19030859-19031637:+
Coord C1 exon
chr7:19030859-19030976
Coord A exon
chr7:19030977-19031482
Coord C2 exon
chr7:19031483-19031637
Length
506 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
GCTTGTCATTGTATTATTAGGCT
3' ss Score
5.28
Exon sequences
Seq C1 exon
AAGATAAATCTTTCCAGCTCATCTGAAGGAAGTACAGTTAATTTGGCTCTCTTTGGAGAAGAAAAAGCTGAGACTGAGCCAGAAAAAGCAGCAGAGCTACAGACATGTTTTACAGAAG
Seq A exon
GTATGAAAATGAAATTTGGAGTTAGCAATTGCATTTATGTTGCTGGAAACAAGCATTTGCAGTTCAAGGAAGCTTTTTTGCCAGAGCAGTTCCAGATCCTGATTTAAGTTTTAGAATGTGATTAATTTTGCCTTTCATAGGGGCAAAAAAAACGGGAGCTGCAGGAAAGAAAGGGACAGACTCTTTAGCAGGGTCTGTGGTCTCTGGTGATAGAACAAGGGGAAATCATTTCAAACTTAAAGAGGGGAGACTTAGGTTGGGTTTAAGGAAAAAGTATTTTACAGTGAGGGTGATGAGGAGTTGGAATAGGTTGCTCAGAGAGGTAGATGCTCCGTCCCTGGAGACTTTCAAGGCGAGGCTGGACCAGGCTCTGAGCAACTTGATCTAAATGTGGATGTCCCTGTTCATTGCAGGGGAGTTGGACAAGATGACCTTTAAAGGTCCCTTCCAACTCTAAGGATTCTATGATTCAAAAACCTTCTAATGGCTTGTCATTGTATTATTAG
Seq C2 exon
GCTGTATACAGAAGTTTAAATGCTGTAGATGCAGTATAGAAAGCAGAAGAGGAATAATCTGGTGGAACCTTAGAAAAACTTGCTACAGGATAGTAGAACACAACTGGTTTGAAACATTCATTGTCTTCATGATTCTTCTCAGCAGTGGTACTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027793:ENSGALT00000017809:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF065128=Na_trans_assoc=FE(18.4=100)
A:
NA
C2:
PF065128=Na_trans_assoc=PD(20.8=84.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAATCTTTCCAGCTCATCTGAAGG
R:
CAGAGTACCACTGCTGAGAAGA
Band lengths:
270-776
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]