HsaEX0027047 @ hg19
Exon Skipping
Gene
ENSG00000136895 | GARNL3
Description
GTPase activating Rap/RanGAP domain-like 3 [Source:HGNC Symbol;Acc:25425]
Coordinates
chr9:130107682-130116689:+
Coord C1 exon
chr9:130107682-130107756
Coord A exon
chr9:130116125-130116223
Coord C2 exon
chr9:130116573-130116689
Length
99 bp
Sequences
Splice sites
3' ss Seq
AACCAGGTTTCCTTTTCCAGATG
3' ss Score
8.04
5' ss Seq
AAGGTGGTA
5' ss Score
-0.15
Exon sequences
Seq C1 exon
GCACTAAAACTGAAATCCATTGTGAGAGGGGATGCTCCATCAAGCTTGGCAGCTTCAGGGATCTGTAAAAAAGAG
Seq A exon
ATGACCTTCCATCAGTGCCCGTGTTTGACAGAACTCTGCCAGTGAAGCAAATGCATGTGCTTGAGACCCTGGACCTTCTGGTTCTCAGAGCAGACAAAG
Seq C2 exon
GAAAAGATGCTCGCCTCTTTGTCTTCAGGCTAAGTGCTCTGCAAAAGGGCCTTGAGGGGAAGCAGGCTGGGAAGAGCAGGTCTGACTGCAGAGAAAACAAGTTGGAGAAAACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136895_MULTIEX3-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.207
Domain overlap (PFAM):
C1:
NO
A:
PF0078017=CNH=FE(10.8=100)
C2:
PF0078017=CNH=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATTGTGAGAGGGGATGCT
R:
TCTCCAACTTGTTTTCTCTGCAGT
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)