DreEX6011850 @ danRer10
Exon Skipping
Gene
ENSDARG00000060631 | garnl3
Description
GTPase activating Rap/RanGAP domain-like 3 (garnl3), mRNA [Source:RefSeq mRNA;Acc:NM_001128527]
Coordinates
chr5:32777511-32778663:-
Coord C1 exon
chr5:32778637-32778663
Coord A exon
chr5:32778361-32778465
Coord C2 exon
chr5:32777511-32777627
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGCTTTGCATGCTGGTCTAGATT
3' ss Score
6.42
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CTTCAGATCCGCTGTTCTCCAATGCAG
Seq A exon
ATTCACCAACCCTGCCTCCGGTGCAGGTATTTGACAAAACCTTGACCGTCAAACAAATGCACGTGCTTGAACCTCAGGACCTCCTCATTGCAAGAGCAGACAAAG
Seq C2 exon
GGAAGGATGCTCGACTGTATGTTTACAGACTGAGCACACTCAAACAAGGTATAGAGGAGCGACAGCTCGTCCGCACCAAGTGTGACAGTCGAGAGAACAAGCTTGAGAAAACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060631-'21-24,'21-22,22-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(2.8=100)
A:
PF0078017=CNH=FE(11.4=100)
C2:
PF0078017=CNH=FE(12.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGATCCGCTGTTCTCCA
R:
GGTTTTCTCAAGCTTGTTCTCTCG
Band lengths:
140-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]