GgaEX0000848 @ galGal4
Exon Skipping
Gene
ENSGALG00000000847 | GARNL3
Description
GTPase-activating Rap/Ran-GAP domain-like protein 3 [Source:RefSeq peptide;Acc:NP_001025847]
Coordinates
chr17:10431935-10434777:+
Coord C1 exon
chr17:10431935-10432046
Coord A exon
chr17:10432777-10432875
Coord C2 exon
chr17:10434661-10434777
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGCTTCCTTTTTAGATG
3' ss Score
12.06
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CCTTGGGAGTCCCAGTCTTTCTGCAGTAATTTTCCTCATGAGGTTGTCTGTGCAGATTCTTGGGGCCAGTCCTTGCTGGTTTCTACAGATGCTGGCATCTTGTTAATAGATG
Seq A exon
ATGGTCAAACCACTGTTCAAGTATTTGATAAAACTCTGCAAATAAAGCAGATGCATGTGTTGGAAGCTCTGGATTATTTGATTGCCCGAACAGACAAAG
Seq C2 exon
GGAAAGACTCCCGTCTCCTTGTCTTCAGATTGAGTTCAGTCCAAAAAGATATAGAAACAAAGCAGGTGATAAGAAGCAAATATGACTGCAGAGAAAATAAATTGGAGAGAACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847_MULTIEX3-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=PU(7.3=57.9)
A:
PF0078017=CNH=FE(10.9=100)
C2:
PF0078017=CNH=FE(12.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCATGAGGTTGTCTGTGCA
R:
TCTCTGCAGTCATATTTGCTTCT
Band lengths:
173-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]